Вопрос жизни. Энергия, эволюция и происхождение сложности

Nitschke, W., and M. J. RussellHydrothermal focusing of chemical and chemiosmotic energy, supported by delivery of catalytic Fe, Ni, Mo, Co, S and Se forced life to emerge // Journal of Molecular Evolution 69: 481–496 (2009).

Yamaguchi, A., Yamamoto, M., Takai, K., Ishii, T., Hashimoto, K., and R. NakamuraElectrochemical CO₂reduction by Nicontaining iron sulfides: how is CO₂electrochemically reduced at bisulfide-bearing deep sea hydrothermal precipitates? // Electrochimica Acta 141: 311–318 (2014).

Вероятность серпентинизации на других планетах Млечного Пути

Leeuw, N. H. de, Catlow, C. R., King, H. E., Putnis, A., Muralidharan, K., Deymier, P., Stimpfl, M., and M. J. DrakeWhere on Earth has our water come from? // Chemical Communications 46: 8923–8925 (2010).

Petigura, E. A., Howard, A. W., and G. W. MarcyPrevalence of Earth-sized planets orbiting Sunlike stars // Proceedings National Academy Sciences USA 110: 19273–19278 (2013).

Глава 4. Появление первых клеток

Горизонтальный перенос генов и видообразование

Doolittle, W. F.Phylogenetic classification and the universal tree // Science 284: 2124–2128 (1999).

Lawton, G.Why Darwin was wrong about the tree of life // New Scientist 2692: 34–39 (2009).

Mallet, J.Why was Darwin’s view of species rejected by twentieth century biologists? // Biology and Philosophy 25: 497–527 (2010).

Martin, W. F.Early evolution without a tree of life // Biology Direct 6: 36 (2011).

Nelson-Sathi, S., et al. Origins of major archaeal clades correspond to gene acquisitions from bacteria // Nature, doi: 10.1038/nature13805 (2014).

“Единое дерево жизни”, построенное менее чем по 1 % генов

Ciccarelli, F. D., Doerks, T., Mering, C. von, Creevey, C. J., Snel, B., et al. Toward automatic reconstruction of a highly resolved tree of life // Science 311: 1283–1287 (2006).

Dagan, T., and W. MartinThe tree of one percent // Genome Biology 7: 118 (2006).

Гены архей и бактерий

Charlebois, R. L., and W. F. DoolittleComputing prokaryotic gene ubiquity: Rescuing the core from extinction // Genome Research 14: 2469–2477 (2004).

Koonin, E. V.Comparative genomics, minimal gene-sets and the last universal common ancestor // Nature Reviews Microbiology 1: 127–136 (2003).

Sousa, F. L., Thiergart, T., Landan, G., Nelson-Sathi, S., Pereira, I. A. C., Allen, J. F., Lane, N., and W. F. MartinEarly bioenergetic evolution // Phil. Trans. R. Soc. B 368: 20130088 (2013).

Последний всеобщий предок

Dagan, T., and W. MartinAncestral genome sizes specify the minimum rate of lateral gene transfer during prokaryote evolution // Proceedings National Academy Sciences USA 104: 870–875 (2007).

Edgell, D. R., and W. F. Doolittle Archaea and the origin(s) of DNA replication proteins // Cell 89: 995–998 (1997).