Вопрос жизни. Энергия, эволюция и происхождение сложности

Глава 5. Появление сложных клеток

Размеры геномов

Cavalier-Smith, T.Economy, speed and size matter: evolutionary forces driving nuclear genome miniaturization and expansion // Annals of Botany 95: 147–175 (2005).

Cavalier-Smith, T.Skeletal DNA and the evolution of genome size // Annual Review of Biophysics and Bioengineering 11: 273–301 (1982).

Gregory, T. R.Synergy between sequence and size in large-scale genomics // Nature Reviews in Genetics 6: 699–708 (2005).

Lynch, M.The Origins of Genome Architecture. Sinauer Associates, Sunderland MA (2007).

Возможные ограничения размера генома у эукариот

Cavalier-Smith, T.Predation and eukaryote cell origins: A coevolutionary perspective // International Journal Biochemistry Cell Biology 41: 307–322 (2009).

Duve, C. deThe origin of eukaryotes: a reappraisal // Nature Reviews in Genetics 8: 395–403 (2007).

Koonin, E. V.Evolution of genome architecture // International Journal Biochemistry Cell Biology 41: 298–306 (2009).

Lynch, M., and J. S. ConeryThe origins of genome complexity // Science 302: 1401–1404 (2003).

Maynard Smith, J., and E. Szathmáry The Major Transitions in Evolution. Oxford University Press, Oxford. (1995).

Химерное происхождение эукариот

Cotton, J. A., and J. O. McInerneyEukaryotic genes of archaebacterial origin are more important than the more numerous eubacterial genes, irrespective of function // Proceedings National Academy Sciences USA 107: 17252–17255 (2010).

Esser, C., Ahmadinejad, N., Wiegand, C., et al. A genome phylogeny for mitochondria among alpha-proteobacteria and a predominantly eubacterial ancestry of yeast nuclear genes // Molecular Biology Evolution 21: 1643–1660 (2004).

Koonin, E. V.Darwinian evolution in the light of genomics // Nucleic Acids Research 37: 1011–1034 (2009).

Pisani, D., Cotton, J. A., and J. O. McInerneySupertrees disentangle the chimeric origin of eukaryotic genomes // Molecular Biology Evolution 24: 1752–1760 (2007).

Rivera, M. C., and J. A. LakeThe ring of life provides evidence for a genome fusion origin of eukaryotes // Nature 431: 152–155 (2004).

Thiergart, T., Landan, G., Schrenk, M., Dagan, T., and W. F. MartinAn evolutionary network of genes present in the eukaryote common ancestor polls genomes on eukaryotic and mitochondrial origin // Genome Biology and Evolution 4: 466–485 (2012).

Williams, T. A., Foster, P. G., Cox, C. J., and T. M. EmbleyAn archaeal origin of eukaryotes supports only two primary domains of life // Nature 504: 231–236 (2013).

Позднее происхождение брожения

Say, R. F., and G. FuchsFructose 1,6-bisphosphate aldolase/phosphatase may be an ancestral gluconeogenic enzyme // Nature 464: 1077–1081 (2010).

Стехиометрия накопления энергии

Hoehler, T. M., and B. B. Jørgensen Microbial life under extreme energy limitation // Nature Reviews in Microbiology 11: 83–94 (2013).

Lane, N.Why are cells powered by proton gradients? // Nature Education 3: 18 (2010).